PhD Theses (Biosciences and Bioengineering)

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Browsing PhD Theses (Biosciences and Bioengineering) by Subject "Adhesion"

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    Evaluation of Synthetic Ligands as Staphylococcal Nuclease Inhibitors for Potential Anti-MRSA Therapy
    (2023) Konwar, Barlina
    Mitigation of infections caused by methicillin-resistant Staphylococcus aureus (MRSA) is challenging as the pathogen is resistant to a large number of therapeutic antibiotics. Hence, there is an impending need to develop alternate and effective therapeutic approaches in order to counter life-threatening MRSA infections. The current study is an endeavor to address this important and contemporary issue and highlights the prospect of deploying rationally designed small synthetic ligands and target the staphylococcal nuclease enzyme or MNase, which is a key virulence factor present in the pathogen. The present study demonstrates that an anthraquinone-based ligand (C1) could render a non-competitive inhibition, decrease the turnover number as well as catalytic efficiency of MNase, with an IC50 value of 323 nM. A potentially therapeutic C1-loaded HSA nanocarrier (C1-HNC) was developed, which rendered a sustained and protease-triggered release of the payload in presence of the cell-free extract of a clinical MRSA strain. Interestingly, the eluates from the payload nanocarrier could significantly inhibit MNase-catalyzed DNA cleavage. In another study, it was demonstrated that a benzimidazole-based ligand C2 could significantly inhibit MNase, preserve the integrity of the DNA scaffold and promote higher sequestration of MRSA by DNA, which in turn, enhanced the uptake of the DNA-entrapped-pathogen by activated macrophage-like cells. In continuation of the efforts to identify synthetic MNase inhibitors, model in vitro experiments revealed that a napthalimide-based ligand C1 could inhibit MNase, enhance MRSA entrapment in DNA and mediate enhanced pathogen uptake by activated macrophage-like cells. A pluronic F-127 nano-micellar carrier loaded with C1 was developed, wherein the anti-adhesion activity of both the carrier as well as the payload was leveraged in tandem, resulting in significant inhibition of MRSA adhesion onto collagen. Interestingly, the biocompatible C1-loaded nano-micellar arsenal could also hinder MRSA biofilm formation on orthopaedic titanium wire. The present study contributes to the continuous endeavor of discovering anti-MRSA therapeutics and demonstrates the potential of synthetic MNase inhibitors that can not only curb the virulence of MRSA but also empower the host innate immune cells for effective mitigation of infections caused by the pathogen.
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    Studies on the Adjuvant Potential of Synthetic Ligands for Targeting MRSA in Combination Therapy
    (2022) Bhattacharjee, Basu
    Methicillin-resistant Staphylococcus aureus (MRSA) is a major healthcare concern as the pathogen is not only associated with hospital-acquired infections but also holds implications in community-acquired infections. Mitigation of MRSA infection is an arduous task as the number of therapeutic antibiotics effective against clinical strains of MRSA are limited. This crisis underpins a critical need to develop antagonistic agents that can counter the resistance mechanism and resensitize the pathogen against therapeutic antibiotics. To address this pertinent healthcare issue, the current work highlights the adjuvant potential of rationally designed synthetic efflux pump inhibitor (EPI) and membrane-targeting antibacterials to counter the core resistance mechanism in MRSA and restore susceptibility of the pathogen to low doses of a therapeutic antibiotic. As a first objective, the potential of urea-based synthetic ligands (C1-C8) as an EPI was studied. Amongst the ligands, C8 could significantly inhibit efflux pump activity, downregulate expression of norA gene, reduce the minimum inhibitory concentration (MIC) of ciprofloxacin (CPX) by 16-fold and prevent emergence of CPX resistance in a clinical strain of MRSA till 120 generations. The therapeutic potency of C8 was leveraged by generating a C8-loaded PLGA nanocarrier (C8-PNC), which displayed EPI activity and could potentiate the efficacy of CPX against MRSA. Further, the payload nanocarrier (C8-PNC) was non-toxic to HEK-293 cells and could effectively hinder adhesion of MRSA cells onto collagen in combination with CPX. It is acknowledged that the bacterial cell membrane is a formidable permeability barrier for antibiotics. Hence, it was conceived that antibacterials that can breach the membrane hold significant prospect against MRSA. Amongst a set of quinoxaline-based synthetic ligands (C1-C4), the ligand C2 could remarkably impede MRSA cell growth, with an MIC of 32 μM, render dose-dependent membrane-directed activity and inhibit MRSA biofilm formation. A quantitative real-time PCR analysis indicated that C2 could influence the expression of the regulator element agrC and the adhesin genes fnbA and cnbA, which are implicated in MRSA biofilm formation. The membrane-targeting C2 could also be effectively leveraged as an adjuvant molecule to heighten the potency of CPX, deter the emergence of CPX resistance trait in MRSA cells over 360 generations and effectively counter MRSA invasion in an in vitro bone cell infection model. Interestingly, the adjuvant potential of C2 was also leveraged by developing a biocompatible C2-loaded HSA nanocarrier (C2-HNC), which in combination with CPX could thwart the invasion of MRSA onto titanium wire, which was used in in vitro experiments as a model orthopaedic implant. The payload nanocarrier C2-HNC was also non-toxic to cultured bone cells. The rational design of the adjuvants described in the Ph.D. thesis work is an illustration of judicious medicinal chemistry to address a pertinent global healthcare problem. It is envisaged that the nanomaterials developed in the current study can serve as prototypes of therapeutic adjuvants to alleviate MRSA infections in soft tissue and bone implants.